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Posted: May 23, 2016

New study captures ultrafast motion of proteins

(Nanowerk News) A new study by an international team of researchers, affiliated with Ulsan National Institute of Science and Technology (UNIST) has announced that they have succeeded for the first time in observing the structural changes in carbonic anhydrase (PNAS, "Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals").
The breakthrough comes from a research, conducted by Professor Chae Un Kim (School of Natural Science) of UNIST in collaboration with researchers from Soongsil University, Cornell University, and University of Florida.
Carbonic anhydrase, which is found within red blood cells, is a crucial enzyme that stabilizes carbon dioxide (CO2) concentrations. This enzyme catalyzes a reaction converting CO2 and water into carbonic acid, which associates into protons and bicarbonate ions.
Moreover, it is also known that carbonic anhydraseis is able to catalyze at a rate of 106 reactions per second. In the absence of this catalyst, the conversion from CO2 to bicarbonate, and vice versa, would be extremely slow and difficult.
Schemic image, showing protein movement during CO2 release in carbonic anhydrase ii crystals.
Schemic image, showing protein movement during CO2 release in carbonic anhydrase ii crystals. (click on image to enlarge)
One of the important functions of the enzyme in humans is to adjust the acidity of the chemical environment to prevent damange to the body, as well as to help transport carbon dioxide out from tissue cells to the lungs. Although carbonic anhydrase performs a lot of beneficial functions, defects in the enzyme are responsible for developing diseases, such as glaucoma, acidemia, or osteopetrosis.
Prof. Kim, the lead researcher of the study states, "The reaction rate of carbonic anhydrase is one of the fastest of all enzymes." He continues, "Due to the rapid movement of proteins, direct observation for such movement has been extremely difficult to obtain, protein scientists say."
In this study, Prof. Kim's team used their own method of "High-pressure Crycooling" and "X-ray Crystallography" to capture the gaseous carbon dioxide in crystals of carbonic anhydrase and follow the sequential structure changes as the carbon dioxide is released.
The results of the study will not only greatly contribute to the future biomedical research and new drug development, but will also help make carbon capture more economic.
According to Prof. Kim of UNIST, "This study also shows technical methods that may be applicable to other enzymes that bind and react to low-molecular weight substrates, such as CO2 and NO2."
Source: Ulsan National Institute of Science and Technology
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