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Posted: December 29, 2008

Researchers find what drives one of nature's powerful, nanoscale motors

(Nanowerk News) Peering at structures only atoms across, researchers have identified the clockwork that drives a powerful virus nanomotor.
Because of the motor's strength--to scale, twice that of an automobile--the new findings could inspire engineers designing sophisticated nanomachines. In addition, because a number of virus types may possess a similar motor, including the virus that causes herpes, the results may also assist pharmaceutical companies developing methods to sabotage virus machinery.
Researchers from Purdue University in West Lafayette, Ind., and the Catholic University of America in Washington, D.C., collaborated on the study that appears in the Dec. 26, 2008, issue of the journal Cell.
This artist's conception depicts the structure of a molecular motor that packages DNA into the head segment of the T4 virus
This artist's conception depicts the structure of a "molecular motor" that packages DNA into the head segment of the T4 virus. Researchers at Purdue and The Catholic University of America have determined the atomic structure of this motor, which is made of two ringlike structures, and both of these discs contain five segments made of a protein called gp17. The image shows a cross section of the virus head, or capsid, and an artist's interpretation of the motor as it packages DNA into the virus. The hands represent the five segments of the ringlike structures. Each hand takes a turn grabbing the DNA and moving it into the head until the head is full.
"The discovery of how this virus motor functions represents a significant milestone in the investigation of viral processes," says David Rockcliffe, the program director who oversees a National Science Foundation (NSF) grant that partly funded the research. "This research is a breakthrough that not only may lead to the development of a means of arresting harmful infections, but it also points to possible ways in which nano-devices could be fashioned,"
The virus in the study, called T4, is not a common scourge of people, but its host is: the bacterium Escherichia coli (E. coli). Purdue researchers studied the virus structures, such as the motor, while the Catholic University researchers isolated the virus components and performed biochemical analyses.
"T4 is what's called a 'tailed virus'," says Purdue biologist Michael Rossmann, one of the lead researchers for the study. "It is actually one of the most common types of organisms in the oceans of the world. There are many different, tailed, bacteria viruses--or phages--and all of these phages have such a motor for packaging their DNA, their genome, into their pre-formed heads."
The virus is well known to scientists. "T4 has rich history going back to 1940s when the original genetic tools to understand virus assembly were developed," adds biologist Venigalla Rao of Catholic University, also a lead researcher on the study. "T4 has been an important model system to tease out the details of basic mechanisms by which viruses assemble into infectious particles."
For the recent study, analyses involved two sophisticated instruments capable of studying structures at the nanometer (billionth of a meter) scale. One of the techniques, x-ray crystallography, showed the ordered arrays of atoms in the various structures, while another, called cryo-electron microscopy, let the researchers study the broader shape of the structures without the need for coating or drying out the specimens.
Having already determined the structures of a number of other viral components and how they self-assemble, in this study the researchers focused their attention on the small motor that some viruses use to package DNA into their "heads", protein shells also called capsids.
Not all viruses have a motor such as the one found in the T4 virus, but some viruses that cause human diseases posses molecular motors with similar functions, and likely have similar structures. T4 uses its motor to pack about 171,000 basepairs of genetic information to near-crystalline density within its 120 nanometer by 86 nanometer capsid.
The researchers found that the motor is located at the intersection of the capsid and the virus "tail" and is made of a circular array of proteins called gene product 17 (gp17). Five, two-part, gp17 proteins combine to form a pair of conjoined rings, arrayed so that their upper segments form an upper ring and their lower segments form a lower ring.
As a T4 virus assembles itself, the lower ring of the motor structure attaches to a strand of DNA, while the upper ring attaches to a capsid. The upper and lower rings have opposite charges, which allow the motor to contract and release, alternately tugging at the DNA like a ring of hands pulling on a rope.
The process draws the DNA strand upwards into the capsid where it is protected from damage, enabling the virus to survive and reproduce. After the DNA is inside the capsid, the motor falls off, and a virus tail attaches to the capsid.
Until now, researchers did not know how T4, or any other virus, accomplished the DNA packaging. According to Rao, "Since the assembly of herpes viruses closely resembles that of T4, this research might provide insights on how to manipulate herpes infections."
While many questions remain, adds Rossmann, the virus may lend itself to a variety for medical purposes. One example Rossmann cites is as a potential new weapon to fight dangerous microbes.
"Bacteriophages like T4 are a completely alternative way of dealing with unwanted bacteria. The virus can kill bacteria in its process of reproduction, so use of such viruses as antibiotics has been a long looked-for alternative to overcome the problems which we now have with antibiotics."
Source: National Science Foundation